I use thmtools for my theorems. But when I use it, my footnotes done with \footnote{foo} don't appear in the footer, they are in the footer of the theorem.
I declare my theorem like this
\declaretheorem[shaded={bgcolor=red},sibling=definition]{lemma}
This is the way I use them
\begin{lemma}
Lorem ipsum\footnote{bar}.
\end{lemma}
\begin{lemma} Lorem ipsum\footnotemark. \end{lemma} \footnotetext{bar}– jub0bs Dec 08 '13 at 21:27