0

I'm a relatively new qiime2 (bioinformatics tool based on python language) and python user.

So far, I have been using qiime2 inside a virtual machine, which is ok but not great.

Since I'm taking a python course and have gotten used to work with pycharm, I'm trying to install the latest version of qiime2 in pycharm.

I use anaconda as my python interperter.

However, I can't get past the wget installation which seemes to be the problem. any ideas on how to solve this?

thanks a lot!

PS C:\Users\USER\PycharmProjects\QIIME2> conda install wget
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done                                   
Solving environment: failed with initial frozen solve. Retrying with flexible solve.  
                                                                                      
PackagesNotFoundError: The following packages are not available from current channels:
                                                                                      
  - wget                                                                              
                                                                                      
Current channels:                                                                     
                                                                                      
PS C:\Users\USER\PycharmProjects\QIIME2> wget https://data.qiime2.org/distro/core/qiime2-2022.2-py38-linux-conda.yml


StatusCode        : 200                     
StatusDescription : OK                      
Content           : channels:               
                      - qiime2/label/r2022.2
                      - conda-forge         
                      - bioconda            
                      - defaults            
                    dependencies:           
                      - _libgcc_mutex=0.1   
                      - _openmp_mutex=4.5   
                      - _r-mutex=1.0.1      
                      - alsa-lib=1.2.3      
                      - argcomplete=2.0.0   
                      - a...
RawContent        : HTTP/1.1 200 OK
                    Connection: keep-alive
                    Strict-Transport-Security: max-age=31536000
abc_123
  • 1
  • 1
  • * edit: I was able to install the file through the help of this post: https://stackoverflow.com/questions/64273930/how-to-download-a-file-in-pycharm-instead-of-wget-in-colab. However, I'm not succeding installing the downloaded file. anyone with experience installing files on pycharm? – abc_123 Apr 30 '22 at 14:00

0 Answers0