How do I convert a IPython Notebook into a Python file via commandline?

Question

I'm looking at using the *.ipynb files as the source of truth and programmatically 'compiling' them into .py files for scheduled jobs/tasks.

The only way I understand to do this is via the GUI. Is there a way to do it via command line?

Answer 1

If you don't want to output a Python script every time you save, or you don't want to restart the IPython kernel:

On the command line, you can use nbconvert:

$ jupyter nbconvert --to script [YOUR_NOTEBOOK].ipynb

As a bit of a hack, you can even call the above command in an IPython notebook by pre-pending ! (used for any command line argument). Inside a notebook:

!jupyter nbconvert --to script config_template.ipynb

Before --to script was added, the option was --to python or --to=python, but it was renamed in the move toward a language-agnostic notebook system.

Answer 2

If you want to convert all *.ipynb files from current directory to python script, you can run the command like this:

jupyter nbconvert --to script *.ipynb

Answer 3

Here is a quick and dirty way to extract the code from V3 or V4 ipynb without using ipython. It does not check cell types, etc.

import sys,json

f = open(sys.argv[1], 'r') #input.ipynb
j = json.load(f)
of = open(sys.argv[2], 'w') #output.py
if j["nbformat"] >=4:
        for i,cell in enumerate(j["cells"]):
                of.write("#cell "+str(i)+"\n")
                for line in cell["source"]:
                        of.write(line)
                of.write('\n\n')
else:
        for i,cell in enumerate(j["worksheets"][0]["cells"]):
                of.write("#cell "+str(i)+"\n")
                for line in cell["input"]:
                        of.write(line)
                of.write('\n\n')

of.close()

Answer 4

Following the previous example but with the new nbformat lib version :

import nbformat
from nbconvert import PythonExporter

def convertNotebook(notebookPath, modulePath):

  with open(notebookPath) as fh:
    nb = nbformat.reads(fh.read(), nbformat.NO_CONVERT)

  exporter = PythonExporter()
  source, meta = exporter.from_notebook_node(nb)

  with open(modulePath, 'w+') as fh:
    fh.writelines(source.encode('utf-8'))

Answer 5

Jupytext is nice to have in your toolchain for such conversions. It allows not only conversion from a notebook to a script, but you can go back again from the script to notebook as well. And even have that notebook produced in executed form.

jupytext --to py notebook.ipynb                 # convert notebook.ipynb to a .py file
jupytext --to notebook notebook.py              # convert notebook.py to an .ipynb file with no outputs
jupytext --to notebook --execute notebook.py    # convert notebook.py to an .ipynb file and run it 

Answer 6

You can do this from the IPython API.

from IPython.nbformat import current as nbformat
from IPython.nbconvert import PythonExporter

filepath = 'path/to/my_notebook.ipynb'
export_path = 'path/to/my_notebook.py'

with open(filepath) as fh:
    nb = nbformat.reads_json(fh.read())

exporter = PythonExporter()

# source is a tuple of python source code
# meta contains metadata
source, meta = exporter.from_notebook_node(nb)

with open(export_path, 'w+') as fh:
    fh.writelines(source)

Answer 7

I understand this is an old thread. I have faced the same issue and wanted to convert the .pynb file to .py file via command line.

My search took me to ipynb-py-convert

By following below steps I was able to get .py file

1. Install "pip install ipynb-py-convert"
2. Go to the directory where the ipynb file is saved via command prompt
3. Enter the command

> ipynb-py-convert YourFileName.ipynb YourFilename.py

Eg:. ipynb-py-convert getting-started-with-kaggle-titanic-problem.ipynb getting-started-with-kaggle-titanic-problem.py

Above command will create a python script with the name "YourFileName.py" and as per our example it will create getting-started-with-kaggle-titanic-problem.py file

Answer 8

For converting all *.ipynb format files in current directory to python scripts recursively:

for i in *.ipynb **/*.ipynb; do 
    echo "$i"
    jupyter nbconvert  "$i" "$i"
done

Answer 9

The following example turns an Iron Python Notebook called a_notebook.ipynb into a python script called a_python_script.py leaving out the cells tagged with the keyword remove, which I add manually to the cells that I don't want to end up in the script, leaving out visualizations and other steps that once I am done with the notebook I don't need to be executed by the script.

import nbformat as nbf
from nbconvert.exporters import PythonExporter
from nbconvert.preprocessors import TagRemovePreprocessor

with open("a_notebook.ipynb", 'r', encoding='utf-8') as f:
    the_notebook_nodes = nbf.read(f, as_version = 4)

trp = TagRemovePreprocessor()

trp.remove_cell_tags = ("remove",)

pexp = PythonExporter()

pexp.register_preprocessor(trp, enabled= True)

the_python_script, meta = pexp.from_notebook_node(the_notebook_nodes)

with open("a_python_script.py", 'w', encoding='utf-8') as f:
    f.writelines(the_python_script)

Answer 10

Using nbconvert 6.07 and jupyter client 6.1.12:

Convert jupyter notebook to python script

$ jupyter nbconvert mynotebook.ipynb --to python

Convert jupyter notebook to python script specifying output filename

$ jupyter nbconvert mynotebook.ipnb --to python --output myscript.py

Answer 11

There's a very nice package called nb_dev which is designed for authoring Python packages in Jupyter Notebooks. Like nbconvert, it can turn a notebook into a .py file, but it is more flexible and powerful because it has a lot of nice additional authoring features to help you develop tests, documentation, and register packages on PyPI. It was developed by the fast.ai folks.

It has a bit of a learning curve, but the documentation is good and it is not difficult overall.

Answer 12

I had this problem and tried to find the solution online. Though I found some solutions, they still have some problems, e.g., the annoying Untitled.txt auto-creation when you start a new notebook from the dashboard.

So eventually I wrote my own solution:

import io
import os
import re
from nbconvert.exporters.script import ScriptExporter
from notebook.utils import to_api_path


def script_post_save(model, os_path, contents_manager, **kwargs):
    """Save a copy of notebook to the corresponding language source script.

    For example, when you save a `foo.ipynb` file, a corresponding `foo.py`
    python script will also be saved in the same directory.

    However, existing config files I found online (including the one written in
    the official documentation), will also create an `Untitile.txt` file when
    you create a new notebook, even if you have not pressed the "save" button.
    This is annoying because we usually will rename the notebook with a more
    meaningful name later, and now we have to rename the generated script file,
    too!

    Therefore we make a change here to filter out the newly created notebooks
    by checking their names. For a notebook which has not been given a name,
    i.e., its name is `Untitled.*`, the corresponding source script will not be
    saved. Note that the behavior also applies even if you manually save an
    "Untitled" notebook. The rationale is that we usually do not want to save
    scripts with the useless "Untitled" names.
    """
    # only process for notebooks
    if model["type"] != "notebook":
        return

    script_exporter = ScriptExporter(parent=contents_manager)
    base, __ = os.path.splitext(os_path)

    # do nothing if the notebook name ends with `Untitled[0-9]*`
    regex = re.compile(r"Untitled[0-9]*$")
    if regex.search(base):
        return

    script, resources = script_exporter.from_filename(os_path)
    script_fname = base + resources.get('output_extension', '.txt')

    log = contents_manager.log
    log.info("Saving script at /%s",
             to_api_path(script_fname, contents_manager.root_dir))

    with io.open(script_fname, "w", encoding="utf-8") as f:
        f.write(script)

c.FileContentsManager.post_save_hook = script_post_save

To use this script, you can add it to ~/.jupyter/jupyter_notebook_config.py :)

Note that you may need to restart the jupyter notebook / lab for it to work.

Answer 13

On my mint [ubuntu] system at work, even though jupyter was already installed and notebooks worked, jupyter nbconvert --to script gave the error no file/directory until I did a separate

sudo apt-get install jupyter-nbconvert

Then all was fine with the conversion. I just wanted to add this in case anyone hits the same error (for me it was confusing as I thought the no file error referred to the notebook, which was definitely there in the local directory, took me a while to realize the subcommand was not installed).

Answer 14

The %notebook foo.ipynb magic command will export the current IPython to "foo.ipynb".

More info by typing %notebook?