I am a bit confused about how to calculate Jensen's alpha, having encountered a variety of methodologies.
Based on his 1967 paper, Jensen's equation for the estimation of alpha is:
$\tilde{R_{jt}} - R_{ft} = \alpha_j + \beta_j[\tilde{R_{mt}} - R_{ft}] + \tilde{u_{jt}}$
Accordingly, please correct me if I am wrong, $\alpha_j$ would be estimated by OLS, as the intercept of a linear regression of the fund's excess returns on the market's excess returns and beta would be:
$\hat\beta_j = Cov(\tilde{R_{jt}} - R_{ft}, \tilde{R_{mt}} - R_{ft})/Var(\tilde{R_{mt}} - R_{ft})$
However, I have stumbled upon another way to compute alpha, based on estimating beta as:
$\hat\beta_j = Cov(\tilde{R_{jt}}, \tilde{R_{mt}})/Var(\tilde{R_{mt}})$
And then computing the fund's expected return as:
$E(\tilde{R_{jt}}) = R_{ft} + \beta_j[E(\tilde{R_{mt}}) - R_{ft}]$
And, finally, calculating alpha as:
$\hat\alpha_j = R_{jt} - E(\tilde{R_{jt}})$
Where $R_{jt}$ would be the observed return of fund j at time t.
What is the difference between the two approaches and which would should I use if I am interested in estimating fund alphas?