Partial answer - $\color{red}{\text{Warning - solutions are not spoilered}}$
Order of solve, decomposed into 3 levels:
Sorry to the colourblind
- Red, orange, light green, dark green, light blue, dark blue, purple, brown
- Thick lines, thin lines
- No dot, 1 dot
Solutions to all puzzles
Puzzle 1

NB: the ? should be a 0 to make the word ENCRYPT using AZ26
Puzzle 2

Puzzle 3

Puzzle 4

Puzzle 5

Puzzle 6

Puzzle 7

NB: For puzzles 3, 4 and especially 5, there was quite a bit of casework, which has been omitted from the presented solution, but please feel free to ask me if you need help following a particular step (having done all previous steps).
Solutions to conundrum 1 and 3 and informal solution to 2
Conundrum 1
Label the boxes $1, 2, 3, \dots, n$ and the cells within box $i$ $(i,1), (i,2), (i,3), \dots, (i,n)$.
Observe that if the number $n$ is in $(i,j)$, the number $n$ can't be in $(i,j+1),(i,j+2),\dots,(i,n)$ or $(i+1,1),(i+1,2),\dots,(i+1,j)$ .
So no matter where the number $n$ is in box $1$, it cannot be in $(2,1)$. And no matter where the number $n$ is in box $2$ apart from $(2,1)$, it can't be in either $(3,1)$ or $(3,2)$.
We can extend this argument by induction to say that if the number $n$ is in cell $(i,j)$, $i\leq j$. By symmetry, $i\geq j$.
Therefore the number $n$ can only be in cells which have the form $(x,x)$, for some $1\leq x\leq n$.
Now, consider the number $n-1$. If it is in cell $(i,j)$, it can't be in $(i,j+1),(i,j+2),\dots,(i,n)$ or $(i+1,1),(i+1,2),\dots,(i+1,j-1)$ .
So no matter where $n-1$ is in box 1, since it can't be in $(1,1)$, it can't be in $(2,1)$ either. And no matter where $n-1$ is in box 2, since it can't be in $(2,1)$ or $(2,2)$, it can't be in $(3,1)$, $(3,2)$ or $(3,3)$.
We can extend this argument by induction to say that if the number $n$ is in cell $(i,j)$, $i<j$. By symmetry, $i>j$. But this is absurd, so a ripple effect puzzle with $n$ $1\times n$ pieces in a line is not solvable.
NB: 'By symmetry' applies because we can extend the argument identically, but from the other end of the line.
Conundrum 2 (informal solution)
Suppose the regions are all of size $n$.
The density of the number $n$ in an arbitrary region should be $\frac{1}{n}$, since each region has $1$ $n$ out of $n$ squares.
However, each $n$ eliminates $4n$ squares (with multiplicity) from being $n$, and each square can be eliminated up to $4$ times, so there should be about $n$ non-$n$ squares for every $n$ squares, leading to a density of $\frac{1}{n+1}$.
But $\frac{1}{n}\neq\frac{1}{n+1}$, contradiction.
Obviously, the notion of 'density' needs work on, but this is an intuitive outline to a potential solution.
Conundrum 3

Solve path:
- Black - lone 1s
- Red - 1s can't be anywhere else in the box
- Blue - Forced infinite ripple - either nothing but 3 can go in the cell, or nothing but 2 can go in the cell
- Green - Last cell in the box
- Orange - 2s and 3s can't be anywhere else in the box
Minimality:
Suppose we had only regions of size 1 - then we would have only 1s and two 1s would be adjacent.
Suppose we had only regions of size 1 or 2 - then we would have only 1s and 2s. Then either we have all 1s, all 2s, both are which are bad as above, or a 1 and 2 next to each other. But then neither 1 nor 2 can be in the cell on the opposite side of the 1 to the 2.
So 3 is the smallest n that works.
Knot inKs shadow rule extend over gaps "outside" a puzzle's grid (eg. between the sail and hull of the boat)? – Alconja Oct 22 '17 at 22:59