The question of what makes a signal analog or digital is a very good question.
Let's consider a square wave signal. If the signal is sampled at regular intervals of time and then decisions are taken based on comparing the value of the signal with a threshold, then the signal is digital. If the continuous value of the signal is used at every instant of time then it is analog. So the question of analog or digital depends on what is done with the signal.
For example, a stepper motor is driven continuously with a square wave signal. Then it is discrete valued and continuous time, since the signals are not sampled but have discrete values. It is not digital. Digital signals are discrete in both amplitude and time.
Radio Frequency microwaves are transmitted as Electromagnetic waves, which are continuous according to electromagnetic theory.
If the information is transmitted as it is without sampling and quantization then it is analog communication, else it is digital communication. For digital communication, you have to ensure that the signal is sampled at or above the Nyquist sampling rate for no loss of information (read the Sampling Theorem for more details on that). The continuous time signal is converted to a digital signal at the receiver side, while the digital signal is converted to a continuous time signal at the transmitter side in digital communication. This conversion process is done using modulation at the transmitter side and demodulation at the receiver side.
Regarding the concern of noise, there are clever tricks used to ensure the signal can be transmitted and received even in the presence of noise. The digital signal is compressed, and redundant bits are added to enable error detection and error correction of the corrupted bits. There is the Shannon limit, that tells us the maximum bandwidth of a channel at a particular noise level.
Noise can be filtered using digital filters.