Of course - there are thousands of disagreements between Protestants. Why would it be otherwise?
What sola scriptura means is that the scriptures are the highest and final authority. Sola scriptura means that an argument founded on experience, reason, emotion, history, science, or the teachings of past Christians, cannot be used to trump an argument founded on scripture. But it does not mean that the scriptures are perfectly clear, nor that Christians will never have disagreements. Sola scriptura does not promise that we can answer every question, but it does say that when we submit ourselves to listen to God's revealed word in the Bible, that God will speak authoritatively to us through those words as the Spirit guides our understanding.
What you propose, that later interpretations must yield to the teachings of older churches, is the exact opposite of sola scriptura.