Searching for gene expression data by cell line

Question

I have two cancer cell lines (OCI-Ly18 & riva) that I want to find gene expression data for, but I'm not aware of many gene expression databases that allow searching by cell-line without searching by gene.

I tried Genevestigator on the recommendation of this thread but found no data on either cell line.

What would be the best way to find gene expression data for these cell lines?

score 5 · Accepted Answer · answered Jun 16 '17 at 11:59

5

Try the Gene Expression Omnibus - it looks like they have some datasets.

answered Jun 16 '17 at 11:59

Kristoffer Vitting-Seerup

374
1
8

@JSneathThompson Consider marking the answer as accepted if it seems to be the best working solution for you. – bli Jun 19 '17 at 11:05

score 0 · Answer 2 · answered Jun 16 '17 at 12:30

Try in this section of Cancer Cell Line Encyclopedia. It has expression data for a lot of cancer cell lines. I have tried few times and found all cell lines I wanted, except HeLa. You just have to select mRNA expression data and download the file you prefer (raw data, gene-centric, etc.)

Searching for gene expression data by cell line

2 Answers2