A collaborator has passed me over Kraken2 outputs *.report and *.kraken, from a metatranscriptomic sequencing experiment conducted on the minION.
I would like to make a tree if the data using a standard phylogenetics package such as phyloseq, however, I am having trouble making an alignment via the OTU table..
There has been a similar question on here already, but the author has resolved it and the solution is not available.
Does anyone have any pointers?
